IL_4V9O_333

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUU*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_333 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.1701

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V9O|1|DA|G|833
4V9O|1|DA|U|834
4V9O|1|DA|U|835
*
4V9O|1|DA|G|851
4V9O|1|DA|G|852
4V9O|1|DA|C|853

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DR

30S ribosomal protein S18

Chain DU

30S ribosomal protein S21