IL_4V9O_407

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V9O|1|EA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_407 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1491

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4V9O|1|EA|G|1059
4V9O|1|EA|U|1060
4V9O|1|EA|U|1061
4V9O|1|EA|G|1062
*
4V9O|1|EA|C|1076
4V9O|1|EA|A|1077
4V9O|1|EA|U|1078
4V9O|1|EA|C|1079

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EI

50S ribosomal protein L11

Chain EM

50S ribosomal protein L16