IL_4V9P_015

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_015 not in the Motif Atlas

Homologous match to IL_5J7L_257

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V9P|1|AA|C|564
4V9P|1|AA|C|565
4V9P|1|AA|U|566
*
4V9P|1|AA|A|575
4V9P|1|AA|U|576
4V9P|1|AA|G|577

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15

Chain AQ

50S ribosomal protein L20

Chain AR

50S ribosomal protein L21