IL_4V9P_035

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V9P|1|AA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_035 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.1009

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V9P|1|AA|C|994
4V9P|1|AA|C|995
4V9P|1|AA|A|996
*
4V9P|1|AA|U|1159
4V9P|1|AA|G|1160

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AJ

50S ribosomal protein L13

Chain AQ

50S ribosomal protein L20

Chain AR

50S ribosomal protein L21

Chain AZ

50S ribosomal protein L30