IL_4V9P_155

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V9P|1|BA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_155 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.3736

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V9P|1|BA|U|684
4V9P|1|BA|G|685
4V9P|1|BA|U|686
4V9P|1|BA|A|687
4V9P|1|BA|G|688
*
4V9P|1|BA|C|699
4V9P|1|BA|G|700
4V9P|1|BA|U|701
4V9P|1|BA|A|702
4V9P|1|BA|G|703
4V9P|1|BA|A|704
4V9P|1|BA|G|705
4V9P|1|BA|A|706

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S ribosomal protein S11