IL_4V9P_285

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_285 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1057

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V9P|1|CA|U|2680
4V9P|1|CA|C|2681
4V9P|1|CA|A|2682
4V9P|1|CA|C|2683
4V9P|1|CA|U|2684
*
4V9P|1|CA|A|2725
4V9P|1|CA|A|2726
4V9P|1|CA|A|2727

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L14

Chain CN

50S ribosomal protein L17

Chain CP

50S ribosomal protein L19