IL_4V9Q_080

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_080 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.2683

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V9Q|1|AA|C|2108
4V9Q|1|AA|U|2109
4V9Q|1|AA|G|2110
*
4V9Q|1|AA|C|2179
4V9Q|1|AA|U|2180
4V9Q|1|AA|G|2181

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BW

Transfer RNA; tRNA