IL_4V9Q_163

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_163 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.3091

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V9Q|1|BA|C|1128
4V9Q|1|BA|C|1129
4V9Q|1|BA|A|1130
4V9Q|1|BA|G|1131
4V9Q|1|BA|C|1132
*
4V9Q|1|BA|G|1142
4V9Q|1|BA|G|1143

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S9