IL_4V9Q_225

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4V9Q|1|CA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_225 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3747

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V9Q|1|CA|G|1319
4V9Q|1|CA|C|1320
4V9Q|1|CA|A|1321
4V9Q|1|CA|A|1322
4V9Q|1|CA|U|1323
4V9Q|1|CA|G|1324
*
4V9Q|1|CA|C|1330
4V9Q|1|CA|A|1331
4V9Q|1|CA|G|1332
4V9Q|1|CA|C|1333

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CS

50S ribosomal protein L22

Chain CT

50S ribosomal protein L23