IL_4V9S_102

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V9S|1|BA|U|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_102 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0667

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V9S|1|BA|G|1077
4V9S|1|BA|A|1078
4V9S|1|BA|U|1079
4V9S|1|BA|G|1080
*
4V9S|1|BA|C|1167
4V9S|1|BA|G|1168
4V9S|1|BA|C|1169

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B9

50S Ribosomal Protein L36

Chain BH

50S Ribosomal Protein L6

Chain BQ

50S Ribosomal Protein L16