IL_4V9S_191

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V9S|1|CA|A|532, 4V9S|1|CA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_191 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1373

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9S|1|CA|G|515
4V9S|1|CA|U|516
4V9S|1|CA|G|517
4V9S|1|CA|C|518
4V9S|1|CA|C|519
4V9S|1|CA|A|520
4V9S|1|CA|G|521
*
4V9S|1|CA|C|528
4V9S|1|CA|G|529
4V9S|1|CA|G|530
4V9S|1|CA|U|531
4V9S|1|CA|A|532
4V9S|1|CA|A|533
4V9S|1|CA|U|534
4V9S|1|CA|A|535
4V9S|1|CA|C|536

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CD

30S Ribosomal Protein S4

Chain CL

30S Ribosomal Protein S12