IL_4W21_049

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

4W21|1|5|G|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87548.2

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4W21|1|5|C|1357
4W21|1|5|G|1358
4W21|1|5|G|1359
4W21|1|5|G|1360
4W21|1|5|G|1361
*
4W21|1|5|C|1376
4W21|1|5|G|1377
4W21|1|5|C|1378
4W21|1|5|C|1379
4W21|1|5|G|1380
4W21|1|5|U|1381
4W21|1|5|G|1382

Current chains

Chain 5

28S ribosomal RNA

Nearby chains