Motif IL_87548.2 Version IL_87548.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-4 | 4-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W21_049 | 4W21 | 0.9382 | 1 | 5 | 28S ribosomal RNA | C | 1376 | C | 1378 | C | 1379 | G | 1380 | U | 1381 | G | 1382 | * | C | 1357 | G | 1358 | G | 1359 | G | 1360 | G | 1361 | cWW | ncWW | ncWW | ||||
| 2 | IL_2QBG_067 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 1712 | A | 1713 | G | 1715 | U | 1716 | A | 1717 | G | 1718 | * | U | 1742 | G | 1743 | A | 1744 | A | 1745 | A | 1746 | cWW | tWW | ncSH | tWH | tHS | cWW | |
| 3 | IL_1FJG_018 | 1FJG | 0.4501 | 0 | 6x5 Sarcin-Ricin; G-bulge (H) | A | SSU rRNA | C | 483 | G | 484 | G | 485 | U | 486 | A | 487 | C | 488 | * | G | 446 | G | 447 | A | 448 | C | 449 | G | 450 | cWW | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCCGUG*CGGGG | 1 |
| UAUGUAG*UGAAA | 1 |
| CGGUAC*GGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCGU*GGG | 1 |
| AUGUA*GAA | 1 |
| GGUA*GAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87548.2 | Only in the parent motif |
|---|---|---|---|
| IL_87548.1 Compare | IL_2QBG_067, IL_1FJG_018 | IL_4W21_049 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- 6x5 Sarcin-Ricin; G-bulge (H) (1)
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.45 | Avg 0.52 | Max 0.96
Coloring options: