3D structure

PDB id
4W21 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
4W21|1|5|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93424.8
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
31

Unit IDs

4W21|1|5|U|1905
4W21|1|5|U|1906
4W21|1|5|A|1907
4W21|1|5|A|1908
4W21|1|5|G|1909
*
4W21|1|5|C|2067
4W21|1|5|C|2068
4W21|1|5|A|2069
4W21|1|5|U|2070
4W21|1|5|A|2071

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA

Coloring options:

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