IL_93424.8

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-3	2-8	3-7	4-7	5-6
1	IL_4W21_094	4W21	0.3715	2		5	28S ribosomal RNA	C	2446	U	2447	G	2448	A	2449	G	2450	*	C	2509	G	2510	A	2511	G	2514	cWW		tWH		tHS	cWW
2	IL_4A1B_067	4A1B	0.3569	2		1	26S RRNA	C	1558	U	1559	A	1560	A	1561	G	1562	*	C	1610	A	1611	A	1612	G	1615	cWW		tWH		tHS	cWW
3	IL_1VX6_069	1VX6	0.3017	2		A	28S ribosomal RNA	C	1681	U	1682	A	1683	A	1684	G	1685	*	C	1728	A	1729	A	1730	G	1733	cWW		tWH		tHS	cWW
4	IL_1S72_052	1S72	0.2903	3	UAA/GAN (H)	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW		tWH		tHS	cWW
5	IL_3U5H_069	3U5H	0.3118	2		5	25S rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW		tWH		tHS	cWW
6	IL_4CUV_070	4CUV	0.2829	2		1	25S RRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW		tWH		tHS	cWW
7	IL_2QBG_054	2QBG	0.1904	1		B	23S rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW		tWH		tHS	cWW
8	IL_4QCN_051	4QCN	0.2276	1		A	23S Ribosomal RNA	C	1624	U	1625	A	1626	A	1627	G	1628	*	C	1463	G	1464	A	1465	G	1467	cWW		tWH		tHS	cWW
9	IL_4QCN_048	4QCN	0.2277	1		A	23S Ribosomal RNA	C	1397	U	1398	A	1399	A	1400	G	1401	*	C	1422	G	1423	A	1424	G	1426	cWW		tWH		tHS	cWW
10	IL_2QBG_051	2QBG	0.2059	1		B	23S rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW		tWH		tHS	cWW
11	IL_1S72_038	1S72	0.2252	1	UAA/GAN (H)	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW		tWH		tHS	cWW
12	IL_4QCN_035	4QCN	0.1950	1		A	23S Ribosomal RNA	C	1044	U	1045	A	1046	A	1047	G	1048	*	C	1199	G	1200	A	1201	G	1203	cWW		tWH		tHS	cWW
13	IL_4IOA_032	4IOA	0.1768	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW		tWH		tHS	cWW
14	IL_2QBG_036	2QBG	0.1729	1		B	23S rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW		tWH		tHS	cWW
15	IL_1VW3_033	1VW3	0.0000	1		A	21S ribosomal RNA	A	924	U	925	A	926	A	927	A	928	*	U	1173	G	1174	A	1175	U	1177	cWW		tWH		tHS	cWW
16	IL_4CUV_131	4CUV	0.2050	1		1	25S RRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW		tWH		tHS	cWW
17	IL_3U5H_126	3U5H	0.2139	1		5	25S rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW		tWH		tHS	cWW
18	IL_4A1B_122	4A1B	0.2160	1		1	26S RRNA	A	3092	U	3093	U	3094	A	3095	U	3096	*	A	3116	G	3117	A	3118	U	3120	cWW		ntWH		tHS	cWW
19	IL_4CUV_054	4CUV	0.2211	1		1	25S RRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW		tWH	ntHW		cWW
20	IL_4W21_076	4W21	0.2717	1		5	28S ribosomal RNA	U	1905	U	1906	A	1907	A	1908	G	1909	*	C	2067	C	2068	A	2069	A	2071	cWW		tWH			cWW
21	IL_4W21_155	4W21	0.2411	1		5	28S ribosomal RNA	A	4681	U	4682	U	4683	A	4684	U	4685	*	A	4705	G	4706	A	4707	U	4709	cWW	ncSH	ntWH		tHS	cWW
22	IL_2XXA_014	2XXA	0.2577	3		G	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW		ntWH		ntHS	cWW
23	IL_4IOA_053	4IOA	0.3857	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW		tWH			cWW
24	IL_4CUV_028	4CUV	0.3952	0		1	25S RRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	ncWW				ntHS	cWW
25	IL_3U5H_024	3U5H	0.3647	0		5	25S rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW		ntSH		tHS	cWW
26	IL_3U5H_124	3U5H	0.3829	2		5	25S rRNA	C	3084	G	3085	A	3086	A	3087	G	3088	*	U	3054	U	3055	U	3057	G	3059	cWW					cWW
27	IL_1S72_092	1S72	0.3393	1	UAA/GAN (H)	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW				tHS	cWW
28	IL_4QCN_056	4QCN	0.4654	0		A	23S Ribosomal RNA	A	1516	G	1517	A	1518	A	1519	G	1520	*	U	1566	G	1567	G	1568	U	1569	cWW				tHS	cWW
29	IL_4A1B_126	4A1B	0.4671	0		1	26S RRNA	G	3195	G	3196	A	3197	A	3198	G	3199	*	U	3212	G	3213	A	3214	C	3215	cWW				ntHS	cWW
30	IL_1X8W_006	1X8W	0.4160	1		A	Tetrahymena ribozyme RNA	C	216	C	217	A	218	A	219	G	220	*	U	253	G	254	C	255	G	257	cWW				ntHS	cWW
31	IL_4W21_152	4W21	0.5491	2		5	28S ribosomal RNA	C	4662	G	4663	A	4664	A	4665	G	4666	*	U	4632	G	4633	A	4635	G	4637	cWW		ntsS			ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	5
AUUAU*AGAAU	4
CUAAG*CAAAAG	2
CUAAG*CGAAAG	2
CUAAG*CGAUG	2
UGCAC*GGGG	2
CUGAG*CGAAAG	1
CUAAG*CGAAAUG	1
UUAAG*CGAGA	1
AUAAA*UGAAU	1
UUAAG*CUAUA	1
UUAAG*CCAUA	1
AUAAG*CGAACCU	1
CUAAA*UGAUG	1
CGAAG*UUUUUG	1
GGUAG*UGUAC	1
AGAAG*UGGU	1
GGAAG*UGAC	1
CCAAG*UGCAG	1
CGAAG*UGUAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UUA*GAA	4
UAA*GAU	3
UAA*AAAA	2
UAA*GAAA	2
GCA*GG	2
UGA*GAAA	1
UAA*GAAAU	1
UAA*GAG	1
UAA*UAU	1
UAA*CAU	1
UAA*GAACC	1
GAA*UUUU	1
GUA*GUA	1
GAA*GG	1
GAA*GA	1
CAA*GCA	1
GAA*GUAU	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_93424.8	Only in the parent motif
IL_93424.7 Compare	IL_4CUV_028, IL_4IOA_053, IL_3U5H_024, IL_3U5H_124, IL_4IOA_032, IL_3U5H_126, IL_3U5H_069, IL_4QCN_048, IL_1VX6_069, IL_4CUV_131, IL_4CUV_054, IL_4CUV_070, IL_1X8W_006, IL_1S72_092, IL_4A1B_067, IL_4A1B_122, IL_4A1B_126, IL_4QCN_051, IL_2QBG_036, IL_1S72_052, IL_4QCN_056, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_4QCN_035, IL_2XXA_014, IL_1VW3_033	IL_4W21_152, IL_4W21_155, IL_4W21_094, IL_4W21_076	IL_1VX2_006, IL_1VWW_095, IL_1VWW_078, IL_1VWW_149

Children motifs

This motif has no children motifs.

Motif IL_93424.8 Version IL_93424.8 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_93424.8 Version IL_93424.8 of this group appears in releases 1.18 to 1.18

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Csv

Json