IL_4W21_105

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37197.4

Basepair signature

cWW-L-L-L-tHS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4W21|1|5|A|2832
4W21|1|5|A|2833
4W21|1|5|C|2834
4W21|1|5|A|2835
4W21|1|5|A|2836
4W21|1|5|U|2837
4W21|1|5|G|2838
*
4W21|1|5|C|3850
4W21|1|5|U|3851
4W21|1|5|A|3852
4W21|1|5|U|3853

Current chains

Chain 5

28S ribosomal RNA

Nearby chains