IL_4W21_174

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAGUAC*GGAAUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

25

Unit IDs

4W21|1|7|G|71
4W21|1|7|U|72
4W21|1|7|U|73
4W21|1|7|A|74
4W21|1|7|G|75
4W21|1|7|U|76
4W21|1|7|A|77
4W21|1|7|C|78
*
4W21|1|7|G|98
4W21|1|7|G|99
4W21|1|7|A|100
4W21|1|7|A|101
4W21|1|7|U|102
4W21|1|7|A|103
4W21|1|7|C|104

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA