IL_4W21_179

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W21_179 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.1763

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4W21|1|5|G|16
4W21|1|5|A|17
4W21|1|5|C|18
4W21|1|5|G|19
*
4W21|1|8|C|138
4W21|1|8|G|139
4W21|1|8|C|140
4W21|1|8|C|141

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains