IL_4W21_186

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACC*GGGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W21_186 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.2918

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4W21|1|5|G|1094
4W21|1|5|A|1095
4W21|1|5|C|1096
4W21|1|5|C|1097
*
4W21|1|5|G|1198
4W21|1|5|G|1199
4W21|1|5|G|1200
4W21|1|5|U|1201
4W21|1|5|C|1202

Current chains

Chain 5

28S ribosomal RNA

Nearby chains