IL_4W21_195

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCG*CGGCG

Length

9 nucleotides

Bulged bases

4W21|1|5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W21_195 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3706

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4W21|1|5|C|2702
4W21|1|5|G|2703
4W21|1|5|C|2704
4W21|1|5|G|2705
*
4W21|1|5|C|2710
4W21|1|5|G|2711
4W21|1|5|G|2712
4W21|1|5|C|2713
4W21|1|5|G|2714

Current chains

Chain 5

28S ribosomal RNA

Nearby chains