IL_4W29_022

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

4W29|1|AA|A|510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_022 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.2427

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4W29|1|AA|C|504
4W29|1|AA|G|505
4W29|1|AA|G|506
4W29|1|AA|C|507
4W29|1|AA|C|508
4W29|1|AA|A|509
4W29|1|AA|A|510
4W29|1|AA|C|511
*
4W29|1|AA|G|540
4W29|1|AA|G|541

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12