IL_4W29_025

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_025 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.2258

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4W29|1|AA|C|578
4W29|1|AA|G|579
4W29|1|AA|U|580
*
4W29|1|AA|G|761
4W29|1|AA|C|762
4W29|1|AA|G|763

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA