IL_4W29_051

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_051 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.213

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4W29|1|AA|C|1158
4W29|1|AA|U|1159
4W29|1|AA|G|1160
4W29|1|AA|C|1161
*
4W29|1|AA|G|1175
4W29|1|AA|A|1176
4W29|1|AA|G|1177
4W29|1|AA|G|1178
4W29|1|AA|A|1179
4W29|1|AA|A|1180
4W29|1|AA|G|1181

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9