IL_4W29_066
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- AUC*GAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AUC,GAU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W29_066 not in the Motif Atlas
- Homologous match to IL_5E81_376
- Geometric discrepancy: 0.3972
- The information below is about IL_5E81_376
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
4W29|1|AW|A|28
4W29|1|AW|U|29
4W29|1|AW|C|30
*
4W29|1|AW|G|40
4W29|1|AW|A|41
4W29|1|AW|U|42
Current chains
- Chain AW
- tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AK
- 30S ribosomal protein S11
- Chain AM
- 30S ribosomal protein S13
- Chain AX
- Transfer RNA; tRNA
Coloring options: