IL_4W29_068

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCUC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCUC,GAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_068 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3076

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4W29|1|AX|C|27
4W29|1|AX|C|28
4W29|1|AX|U|29
4W29|1|AX|C|30
*
4W29|1|AX|G|40
4W29|1|AX|A|41
4W29|1|AX|G|42
4W29|1|AX|G|43

Current chains

Chain AX

tRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein S13

Chain AW

Transfer RNA; tRNA

Chain AY

Elongation factor G