IL_4W29_076

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_076 not in the Motif Atlas

Homologous match to IL_9DFE_007

Geometric discrepancy: 0.1711

The information below is about IL_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48283.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4W29|1|BA|U|239
4W29|1|BA|G|240
4W29|1|BA|A|241
4W29|1|BA|G|242
4W29|1|BA|U|243
4W29|1|BA|A|244
4W29|1|BA|G|245
*
4W29|1|BA|C|253
4W29|1|BA|G|254
4W29|1|BA|A|255
4W29|1|BA|A|256
4W29|1|BA|A|257
4W29|1|BA|G|258

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15