IL_4W29_084

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_084 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1614

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4W29|1|BA|U|606
4W29|1|BA|U|607
4W29|1|BA|A|608
4W29|1|BA|A|609
4W29|1|BA|G|610
*
4W29|1|BA|C|618
4W29|1|BA|G|619
4W29|1|BA|G|620
4W29|1|BA|A|621
4W29|1|BA|G|622

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15