IL_4W29_103

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_103 not in the Motif Atlas

Geometric match to IL_7A0S_034

Geometric discrepancy: 0.2967

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4W29|1|BA|C|1004
4W29|1|BA|C|1005
4W29|1|BA|C|1006
4W29|1|BA|C|1007
4W29|1|BA|C|1008
4W29|1|BA|A|1009
4W29|1|BA|A|1010
4W29|1|BA|G|1011
*
4W29|1|BA|C|1150
4W29|1|BA|G|1151

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20