IL_4W29_121
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GGU*ACC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGU,ACC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W29_121 not in the Motif Atlas
- Geometric match to IL_5AY2_001
- Geometric discrepancy: 0.1403
- The information below is about IL_5AY2_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
4W29|1|BA|G|1413
4W29|1|BA|G|1414
4W29|1|BA|U|1415
*
4W29|1|BA|A|1587
4W29|1|BA|C|1588
4W29|1|BA|C|1589
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
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