IL_4W29_173

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4W29|1|BA|U|2689, 4W29|1|BA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_173 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2931

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|BA|U|2687
4W29|1|BA|U|2688
4W29|1|BA|U|2689
4W29|1|BA|C|2690
4W29|1|BA|C|2691
*
4W29|1|BA|G|2718
4W29|1|BA|G|2719
4W29|1|BA|U|2720
4W29|1|BA|A|2721
4W29|1|BA|G|2722

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19