IL_4W29_197

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4W29|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_197 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1674

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4W29|1|CA|G|148
4W29|1|CA|A|149
4W29|1|CA|C|150
4W29|1|CA|A|151
4W29|1|CA|A|152
4W29|1|CA|C|153
*
4W29|1|CA|G|168
4W29|1|CA|C|169
4W29|1|CA|U|170
4W29|1|CA|A|171
4W29|1|CA|A|172
4W29|1|CA|U|173
4W29|1|CA|C|174

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20