IL_4W29_213

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_213 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1979

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4W29|1|CA|C|569
4W29|1|CA|G|570
4W29|1|CA|U|571
4W29|1|CA|A|572
4W29|1|CA|A|573
4W29|1|CA|A|574
4W29|1|CA|G|575
*
4W29|1|CA|C|880
4W29|1|CA|G|881

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CE

30S ribosomal protein S5

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17