IL_4W29_223

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_223 not in the Motif Atlas

Geometric match to IL_8CRE_446

Geometric discrepancy: 0.3985

The information below is about IL_8CRE_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4W29|1|CA|G|771
4W29|1|CA|U|772
4W29|1|CA|G|773
*
4W29|1|CA|C|806
4W29|1|CA|A|807
4W29|1|CA|C|808

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CO

30S ribosomal protein S15

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DD

50S ribosomal protein L2