IL_4W29_226

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_226 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1827

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4W29|1|CA|G|887
4W29|1|CA|G|888
4W29|1|CA|A|889
4W29|1|CA|G|890
4W29|1|CA|U|891
4W29|1|CA|A|892
4W29|1|CA|C|893
4W29|1|CA|G|894
*
4W29|1|CA|U|905
4W29|1|CA|G|906
4W29|1|CA|A|907
4W29|1|CA|A|908
4W29|1|CA|A|909
4W29|1|CA|C|910

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17