IL_4W29_245

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UACAAAG*CAAAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_245 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.2222

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

4W29|1|CA|U|1247
4W29|1|CA|A|1248
4W29|1|CA|C|1249
4W29|1|CA|A|1250
4W29|1|CA|A|1251
4W29|1|CA|A|1252
4W29|1|CA|G|1253
*
4W29|1|CA|C|1284
4W29|1|CA|A|1285
4W29|1|CA|A|1286
4W29|1|CA|A|1287
4W29|1|CA|A|1288
4W29|1|CA|A|1289
4W29|1|CA|G|1290

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10