IL_4W29_294

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_294 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2742

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4W29|1|DA|G|862
4W29|1|DA|A|863
*
4W29|1|DA|U|913
4W29|1|DA|C|914
4W29|1|DA|C|915

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25