IL_4W29_298

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_298 not in the Motif Atlas

Homologous match to IL_7RQB_031

Geometric discrepancy: 0.3567

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4W29|1|DA|G|875
4W29|1|DA|C|876
4W29|1|DA|U|877
*
4W29|1|DA|A|899
4W29|1|DA|A|900
4W29|1|DA|A|901
4W29|1|DA|C|902

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DZ

50S ribosomal protein L25