3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CCCCCAAGUC*GCG
Length
13 nucleotides
Bulged bases
4W29|1|DA|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_304 not in the Motif Atlas
Geometric match to IL_5F5F_003
Geometric discrepancy: 0.2724
The information below is about IL_5F5F_003
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4W29|1|DA|C|1004
4W29|1|DA|C|1005
4W29|1|DA|C|1006
4W29|1|DA|C|1007
4W29|1|DA|C|1008
4W29|1|DA|A|1009
4W29|1|DA|A|1010
4W29|1|DA|G|1011
4W29|1|DA|U|1012
4W29|1|DA|C|1013
*
4W29|1|DA|G|1149
4W29|1|DA|C|1150
4W29|1|DA|G|1151

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DN
50S ribosomal protein L13
Chain DU
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6496 s
Application loaded.