IL_4W29_316
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W29_316 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3566
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4W29|1|DA|A|1262
4W29|1|DA|U|1263
4W29|1|DA|G|1264
4W29|1|DA|A|1265
4W29|1|DA|G|1266
4W29|1|DA|U|1267
4W29|1|DA|A|1268
4W29|1|DA|A|1269
4W29|1|DA|C|1270
*
4W29|1|DA|G|2010
4W29|1|DA|U|2011
4W29|1|DA|G|2012
4W29|1|DA|A|2013
4W29|1|DA|A|2014
4W29|1|DA|A|2015
4W29|1|DA|U|2016
4W29|1|DA|U|2017
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DF
- 50S ribosomal protein L4
- Chain DR
- 50S ribosomal protein L17
- Chain DW
- 50S ribosomal protein L22
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