IL_4W29_337

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4W29|1|DA|G|1801, 4W29|1|DA|G|1816, 4W29|1|DA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_337 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.2161

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4W29|1|DA|U|1798
4W29|1|DA|G|1799
4W29|1|DA|C|1800
4W29|1|DA|G|1801
4W29|1|DA|A|1802
4W29|1|DA|A|1803
4W29|1|DA|C|1804
*
4W29|1|DA|G|1813
4W29|1|DA|G|1814
4W29|1|DA|A|1815
4W29|1|DA|G|1816
4W29|1|DA|G|1817
4W29|1|DA|U|1818
4W29|1|DA|A|1819
4W29|1|DA|U|1820
4W29|1|DA|A|1821

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2