IL_4W29_359

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_359 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2766

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4W29|1|DA|C|2297
4W29|1|DA|A|2298
4W29|1|DA|G|2299
*
4W29|1|DA|C|2317
4W29|1|DA|G|2318
4W29|1|DA|G|2319
4W29|1|DA|A|2320
4W29|1|DA|G|2321

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18