IL_4W29_377

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUC,GAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_377 not in the Motif Atlas

Geometric match to IL_5Z1I_001

Geometric discrepancy: 0.2683

The information below is about IL_5Z1I_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4W29|1|DA|U|2649
4W29|1|DA|U|2650
4W29|1|DA|C|2651
*
4W29|1|DA|G|2669
4W29|1|DA|A|2670
4W29|1|DA|A|2671

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DO

50S ribosomal protein L14