3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
UGG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W29_393 not in the Motif Atlas
Geometric match to IL_7A0S_107
Geometric discrepancy: 0.3431
The information below is about IL_7A0S_107
Detailed Annotation
Isolated non-canonical cWW
Broad Annotation
Isolated non-canonical cWW
Motif group
IL_10289.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
236

Unit IDs

4W29|1|DB|U|80
4W29|1|DB|G|81
4W29|1|DB|G|82
*
4W29|1|DB|C|94
4W29|1|DB|U|95
4W29|1|DB|G|96

Current chains

Chain DB
5S Ribosomal RNA

Nearby chains

Chain D3
50S ribosomal protein L30
Chain DA
Large subunit ribosomal RNA; LSU rRNA
Chain DQ
50S ribosomal protein L16
Chain DZ
50S ribosomal protein L25

Coloring options:


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