IL_4W29_406

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_406 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.217

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4W29|1|BA|G|1666
4W29|1|BA|G|1667
4W29|1|BA|A|1668
4W29|1|BA|A|1669
4W29|1|BA|C|1670
4W29|1|BA|U|1671
4W29|1|BA|C|1672
4W29|1|BA|U|1673
4W29|1|BA|G|1674
*
4W29|1|BA|C|1990
4W29|1|BA|U|1991
4W29|1|BA|G|1992
4W29|1|BA|U|1993
4W29|1|BA|C|1994

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14