IL_4W29_441

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_441 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3435

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4W29|1|AA|G|953
4W29|1|AA|G|954
*
4W29|1|AA|C|1226
4W29|1|AA|A|1227
4W29|1|AA|C|1228

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19

Chain AW

Transfer RNA; tRNA

Chain AX

Transfer RNA; tRNA