IL_4W2F_055

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_055 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0747

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4W2F|1|AA|C|1303
4W2F|1|AA|G|1304
4W2F|1|AA|G|1305
4W2F|1|AA|A|1306
4W2F|1|AA|U|1307
4W2F|1|AA|U|1308
*
4W2F|1|AA|A|1329
4W2F|1|AA|U|1330
4W2F|1|AA|G|1331
4W2F|1|AA|A|1332
4W2F|1|AA|A|1333
4W2F|1|AA|G|1334

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal Protein S13

Chain AU

30S Ribosomal Protein THX