IL_4W2F_199

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4W2F|1|CA|A|532, 4W2F|1|CA|U|534, 4W2F|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2F_199 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1554

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4W2F|1|CA|G|515
4W2F|1|CA|U|516
4W2F|1|CA|G|517
4W2F|1|CA|C|518
4W2F|1|CA|C|519
4W2F|1|CA|A|520
4W2F|1|CA|G|521
*
4W2F|1|CA|C|528
4W2F|1|CA|G|529
4W2F|1|CA|G|530
4W2F|1|CA|U|531
4W2F|1|CA|A|532
4W2F|1|CA|A|533
4W2F|1|CA|U|534
4W2F|1|CA|A|535
4W2F|1|CA|C|536

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CD

30S Ribosomal Protein S4

Chain CL

30S Ribosomal Protein S12

Chain CV

mRNA

Chain CW

Transfer RNA; tRNA