3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4W2G|1|AA|A|532, 4W2G|1|AA|U|534, 4W2G|1|AA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2G_022 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1509
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4W2G|1|AA|G|515
4W2G|1|AA|U|516
4W2G|1|AA|G|517
4W2G|1|AA|C|518
4W2G|1|AA|C|519
4W2G|1|AA|A|520
4W2G|1|AA|G|521
*
4W2G|1|AA|C|528
4W2G|1|AA|G|529
4W2G|1|AA|G|530
4W2G|1|AA|U|531
4W2G|1|AA|A|532
4W2G|1|AA|A|533
4W2G|1|AA|U|534
4W2G|1|AA|A|535
4W2G|1|AA|C|536

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AC
30S Ribosomal Protein S3
Chain AD
30S Ribosomal Protein S4
Chain AL
30S Ribosomal Protein S12
Chain AV
mRNA
Chain AW
Transfer RNA; tRNA

Coloring options:


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