IL_4W2G_022

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4W2G|1|AA|A|532, 4W2G|1|AA|U|534, 4W2G|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_022 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1509

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4W2G|1|AA|G|515
4W2G|1|AA|U|516
4W2G|1|AA|G|517
4W2G|1|AA|C|518
4W2G|1|AA|C|519
4W2G|1|AA|A|520
4W2G|1|AA|G|521
*
4W2G|1|AA|C|528
4W2G|1|AA|G|529
4W2G|1|AA|G|530
4W2G|1|AA|U|531
4W2G|1|AA|A|532
4W2G|1|AA|A|533
4W2G|1|AA|U|534
4W2G|1|AA|A|535
4W2G|1|AA|C|536

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal Protein S3

Chain AD

30S Ribosomal Protein S4

Chain AL

30S Ribosomal Protein S12

Chain AV

mRNA

Chain AW

Transfer RNA; tRNA