IL_4W2G_226

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4W2G|1|CA|U|1257, 4W2G|1|CA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_226 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.473

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4W2G|1|CA|G|1255
4W2G|1|CA|A|1256
4W2G|1|CA|U|1257
4W2G|1|CA|G|1258
*
4W2G|1|CA|C|1277
4W2G|1|CA|U|1278
4W2G|1|CA|A|1279
4W2G|1|CA|A|1280
4W2G|1|CA|U|1281
4W2G|1|CA|C|1282

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CJ

30S Ribosomal Protein S10

Chain CN

30S Ribosomal Protein S14