IL_4W2G_312

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4W2G|1|DA|A|1938, 4W2G|1|DA|U|1944, 4W2G|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_312 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1255

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4W2G|1|DA|C|1934
4W2G|1|DA|G|1935
4W2G|1|DA|A|1936
4W2G|1|DA|A|1937
4W2G|1|DA|A|1938
4W2G|1|DA|U|1939
4W2G|1|DA|U|1940
4W2G|1|DA|C|1941
4W2G|1|DA|C|1942
4W2G|1|DA|U|1943
4W2G|1|DA|U|1944
4W2G|1|DA|G|1945
*
4W2G|1|DA|C|1961
4W2G|1|DA|C|1962
4W2G|1|DA|U|1963
4W2G|1|DA|G|1964

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DD

50S Ribosomal Protein L2